diff-JASPAR -- find transcription factors in the JASPAR motif collection that match better to a given sequence than to a mutation of that particular sequence.

This is something that could be useful if you have done a gel shift with a particular binding site, and then found that a particular mutation to the binding site abolishes binding, and you want to find out what it is that's binding to that site.

(I personally consider the JASPAR collection to be the best library of binding sites generally available. YMMV. --titus)

index

Good binding site: (Try: AGTGGGAGGTTC)
Mutated binding site: (Try: AGTGGtcGGTTC)

Note: the sequences must be the same length.

Results

The normal sequence is printed as a double-stranded site.

The '*'s are where the mutations are in your mutated binding site. (The mutations themselves are not shown.)

The '-'s underline the binding site; to the right is the name of the transcription factor (taken from the JASPAR binding site collection) that matches to the normal sequence, together with the fold difference of the match to the normal sequence vs the mutated sequence. 


AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -----  <-- S8 (32.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    -----   <-- S8 (20.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- Snail (10.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- Athb-1 (8.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ----  <-- Ubx (7.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- GATA-3 (6.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------  <-- E74A (6.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- TCF11-MafG (6.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ----    <-- Ubx (6.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ----- <-- MNB1A (6.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- Yin-Yang (5.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------  <-- ATHB5 (5.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- c-ETS (5.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -------    <-- Sox-5 (4.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  -------   <-- Sox-5 (4.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ----- <-- PBF (4.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- FREAC-4 (4.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- MEF2 (4.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    -----   <-- GATA-2 (4.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------- <-- FREAC-4 (3.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- SOX-9 (3.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ------<-- Dof2 (3.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
-------     <-- bZIP910 (3.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------  <-- bZIP910 (3.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- SPI-1 (3.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
-------     <-- Nkx (3.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  -------   <-- Sox-5 (3.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- GATA-1 (2.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- CFI-USP (2.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- Hunchback (2.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -------<-- Sox-5 (2.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- Yin-Yang (2.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- FREAC-4 (2.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- E2F (2.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -------    <-- SPI-B (2.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------  <-- Nkx (2.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- SOX-9 (2.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------- <-- c-FOS (2.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ------<-- Dof3 (2.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- SAP-1 (2.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- NRF-2 (2.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 --------   <-- Pax-2 (2.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- c-ETS (2.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- SRY (2.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
-------     <-- SPI-B (2.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  -------   <-- E74A (2.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------  <-- ATHB5 (2.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- ARNT (2.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
-------     <-- USF (2.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- Broad-complex_2 (2.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- n-MYC (2.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- HFH-1 (2.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- Snail (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- SPI-1 (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- Pbx (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ------     <-- MZF_1-4 (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- deltaEF1 (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- Snail (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  -----     <-- MNB1A (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    -----   <-- MNB1A (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- SRY (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    --------<-- c-FOS (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- GATA-1 (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- Gfi (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- ARNT (2.0)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    -----   <-- PBF (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------  <-- bZIP910 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- RORalfa-1 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- Ahr-ARNT (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- n-MYC (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- SOX17 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ------     <-- MZF_1-4 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- Snail (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- MYB.ph3 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  -------   <-- SPI-B (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  -----     <-- PBF (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- n-MYC (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ---------<-- SOX17 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- Dof3 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- TEF-1 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- HFH-1 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- AML-1 (1.9)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -------    <-- USF (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- Yin-Yang (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- c-FOS (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -----  <-- MNB1A (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- TCF11-MafG (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------- <-- Sox-5 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -----  <-- GATA-2 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- Elk-1 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ----- <-- S8 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------  <-- SAP-1 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- ARNT (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------- <-- RUSH1-alfa (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- NRF-2 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------- <-- FREAC-4 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -----  <-- PBF (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- Dof2 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- Dof2 (1.8)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- n-MYC (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- HMG-1 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- SPI-1 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- FREAC-3 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- Dof3 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- TCF11-MafG (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------- <-- Broad-complex_4 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    --------<-- Athb-1 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -------    <-- bZIP910 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- Hunchback (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- Gklf (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- TCF11-MafG (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- AML-1 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- MZF_1-4 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 --------   <-- E2F (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------  <-- SOX-9 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- MEF2 (1.7)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- GAMYB (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    --------<-- c-MYB_1 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- SRY (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  -------   <-- USF (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- deltaEF1 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- Dof2 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- Broad-complex_4 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- Dof3 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- HFH-3 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 --------   <-- FREAC-7 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- Gfi (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- MYB.ph3 (1.6)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- deltaEF1 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- E4BP4 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- n-MYC (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 --------   <-- c-MYB_1 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -------<-- USF (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- Snail (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -------<-- Nkx (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- ARNT (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- SPI-1 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- Ahr-ARNT (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- ARNT (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- HNF-3beta (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- c-MYB_1 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- p65 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- n-MYC (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- ARNT (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- deltaEF1 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- CREB (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- MZF_1-4 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- Elk-1 (1.5)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    --------<-- Pax-2 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------- <-- USF (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- c-MYB_1 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- AML-1 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------- <-- EN-1 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- SPI-1 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- Gklf (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- MZF_1-4 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- Athb-1 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- CFI-USP (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- Thing1-E47 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- Pax-2 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- HMG-1 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- Brachyury (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- Max (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- cEBP (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ------     <-- Yin-Yang (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- MZF_1-4 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 --------   <-- Broad-complex_2 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- Ahr-ARNT (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ------     <-- GATA-3 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -------    <-- E74A (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- HMG-1 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----      <-- GATA-2 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ------     <-- Ahr-ARNT (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- Agamous (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- HFH-2 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- Thing1-E47 (1.4)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- Snail (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ---------<-- SOX17 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- Chop-cEBP (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- CFI-USP (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- GAMYB (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- Max (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------  <-- MYB.ph3 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- Dorsal_2 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    --------<-- Broad-complex_2 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- Dorsal_1 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------- <-- SPI-B (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------- <-- Myc-Max (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- SPI-1 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- Brachyury (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ---------<-- SRY (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
-------     <-- SPI-B (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- MZF_5-13 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- Dorsal_2 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- GATA-3 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- Dorsal_2 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- Broad-complex_3 (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- RUSH1-alfa (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- Hunchback (1.3)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- FREAC-3 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- TCF11-MafG (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- GAMYB (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- AGL3 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- deltaEF1 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ------    <-- c-ETS (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- c-REL (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- NRF-2 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
-------     <-- E74A (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- NF-kappaB (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- SAP-1 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- MZF_5-13 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ----     <-- Ubx (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- Gklf (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- p50 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------- <-- Pax-2 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------  <-- GATA-3 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- RORalfa-1 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- c-ETS (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- Dof3 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----      <-- S8 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
-------     <-- E74A (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ------<-- Yin-Yang (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- Ahr-ARNT (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- AP2alpha (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -----  <-- GATA-2 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- p65 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- E2F (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- CF2-II (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------- <-- FREAC-7 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- Myf (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- p50 (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
--------    <-- RUSH1-alfa (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- c-ETS (1.2)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- MEF2 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ------     <-- GATA-1 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------- <-- AML-1 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     -------<-- bZIP910 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    --------<-- Pax-2 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 --------   <-- Athb-1 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
     ------ <-- GATA-1 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- p65 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- AGL3 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  --------  <-- c-FOS (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- NF-kappaB (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------      <-- GATA-1 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 -----------<-- Agamous (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   -------- <-- FREAC-3 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
   ------   <-- Ahr-ARNT (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
----------  <-- AGL3 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
---------   <-- AP2alpha (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
      ----- <-- PBF (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- MZF_5-13 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
    ------- <-- Nkx (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 --------   <-- c-FOS (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
------------<-- Irf-1 (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
  ----------<-- c-REL (1.1)

AGTGGGAGGTTC
TCACCCTCCAAG
     **     
 ---------- <-- c-REL (1.1)